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Main Documentation

Welcome to OpenAlea documentation wiki pages !

You can find here basic guides and procedures for using openalea and visualea, together with instructions on how to develop your own package.

Wiki pages also contain brief presentations of currently available packages.

For a more complete documentation on alea components and packages, please visit

Highlights

Quick Start

Package documentation

You can also submit your documents you want to share. Contact the administator.

sphinx documentation (full documentation of all packages) Visit the Sphinx documentation pages.

User Documentation

Developer Documentation

Administration Documentation

This section groups documentation for administration purposes.

Formation

Publications

Publications

This section contains all publications associated to the OpenAlea Project and its components (articles, white papers, workshops, presentations, etc).

2016

InfraPhenoGrid: A scientific workflow infrastructure for plant phenomics on the Grid,
C. Pradal, S. Artzet, J. Chopard, D. Dupuis, C. Fournier, M. Mielewczik, V. Negre, P. Neveu, D. Parigot, P. Valduriez, S. Cohen-Boulakia,
Future Generation Computer Systems WebSite

2015

OpenAlea: scientific workflows combining data analysis and simulation,
C. Pradal, C. Fournier, P. Valduriez,S. Cohen-Boulakia,
In Proceedings of the 27th International Conference on Scientific and Statistical Database Management WebSite

2010

Introduction to OpenAlea: a platform for plant modelling,
T. Cokelaer, C. Pradal, C.Godin,
(IHC 2010 slides)

VisuAlea, Towards a Scientific Modelling Environment using Visual Programming,
C. Pradal, D. Barbeau, T. Cokelaer, E. Moscardi
EuroSciPy 2010 slides from euroscipy site (EuroSciPy 2010 slides)

2009

Plant modelling with Python components in OpenAlea,
T. Cokelaer, C. Pradal, C. Fournier
EuroSciPy 2009 Slides

2008

OpenAlea: A visual programming and component-based software platform for plant modeling,
C. Pradal, S. Dufour-Kowalski, F. Boudon, C. Fournier, C. Godin
Functional Plant Biology WebSite

2007

Openalea - Visual programming and component based software for plant modeling,
C. Pradal, S. Dufour-Kowalski,
Europython conference - 2007. openalea_europython07.pdf WebSite

OpenAlea - An open-source platform for the integration of heterogeneous fspm components,
S. Dufour-Kowalski, C. Pradal, N. Dones, P. Barbier de Reuille, F. Boudon, J. Chopard, D. DaSilva, J.-B. Durand, P. Ferraro, C. Fournier, Y. Guédon, A. Ouangraoua, C. Smith8, S. Stoma, F. Théveny, H. Sinoquet and C. Godin,
5th International Workshop on Functional-Structural Plant Models - 2007. fspm07_poster.pdf, Proceedings.

The architecture of OpenAlea: A visual programming and component based software for plant modeling,
C. Pradal, S. Dufour-Kowalski, F. Boudon, N. Dones,
5th International Workshop on Functional-Structural Plant Models, pages 25-1–25-4 - 2007. Abstract

2006

OpenAlea - A platform for plant modelling, analysis and simulation,
C. Pradal, F. Boudon, N. Dones, J.-B. Durand, P. Barbier De Reuille, C. Fournier, H. Sinoquet, C. Godin,
Europython conference - 2006. openalea_europython.pdf http://indico.cern.ch/contributionDisplay.py?contribId=98&sessionId=50&confId=44

2004

ALEA: A software for integrating analysis and simulation tools for 3D architecture and ecophysiology,
C. Pradal, N. Dones, C. Godin, P. Barbier de Reuille, F. Boudon, B. Adam, H. Sinoquet,
4th International Workshop on Functional-Structural Plant Models, page 406 - 2004. 4thfspm04_s8pradal.pdf http://www-sop.inria.fr/virtualplants/Publications/2004/PDGBBAS04/

In French

ALEA : Atelier logiciel libre pour la modélisation des plantes,
C. Pradal, C. Godin,
Causeries d'Intech'Sophia - INRIA - 2005. alea_overview.pdf http://www-sop.inria.fr/intech/causeries/logiciel_libre.html

Communication

 
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