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Release 0.8.0 status

Overview

  • Status of the release 0.8.0
  • Target: administrators

Targets

Information about the branches:

  • openalea:
    1. branch created in openalea/branches/release_0_8 at revision 2101
    2. merge trunk r2102 into branch so now branch is at revision 2103
    3. final revision uploaded on the gforge is 2239
  • vplants: branch created in vplants/vplants/branches/release_0_8 at revision 7524
    1. final revision uploaded on the gforge is 7837
  • openaleapkg is 539 (topvine 541)

packages to be release

  • openalea: those from multisetup + openalea_meta that is: core, deploy, deploygui, grapheditor, misc, scheduler, sconsx, stdlib, visualea, openalea_meta
  • vplants : PlantGL, tool, stat_tool, sequence_analysis, amlobj, mtg, tree_matching, aml, fractalysis, tree, tree_statistic, container, newmtg, WeberPenn, lpy, vplants_meta

Moreover, PyQGLViewer is required by lpy so it it also part of the release, although not specfied in the recommended packages.

  • openaleapkg: adel, caribu, topvine, graphtal

Bug fixes

Python and BoostPython

This release should solve the conflict between Python (version 2.6.3 and 2.6.4) and BoostPython that must be greater or equal to version 1.41.

So, distribution that have python ⇐2.6.2 are not concerned and can be kept as before.

  • linux : only ubuntu 9.10 has python 2.6.4 so, this distribution is released. However, we also include FC10, FC11, FC12, ubuntu9.10
  • Concerning Windows, a full release is required for python 2.6.4/BoostPython 1.41.
  • Concerning Mac, a full release is required for python 2.6.4./BoostPython 1.41
  • Concerning Windows and Mac, we also want to use the latest Qt4.6 instead of 4.5

Features

  • Views have been recoded. They need more testing for this release. They also require PyQt 4.6.2 and Qt 4.5.2 which ship with Ubuntu 9.10 and Fedora Core 12. There are possible workarounds to support Qt 4.4 but not earlier versions (unless a full rewrite of some components). Question : Should these workarounds be implemented ?
  • Other ?

Work in progress

OPENAlea Packages

in Core/test, test_alias fails (bug report 9400) in Core/test test_session (mac bug report )

Unit Tests
packages Linux FC10 MacOsX Windows
deploy =) =) =)
deploygui =) =) =)
core 3 errors 3 errors 2 errors
scheduler =) =) =)
visualea =) =) =)
stdlib =) =) =)
sconsx =) =) =)
misc =) =) =)
grapheditor =) =) =)
openalea_meta =) =) =)

VPlants Packages

  • pglviewer: Library to create custom GUI for 3D views
  • svgdraw: read/write and edit svg scenes
  • mechanics: mass spring computation
  • Tissue
    1. celltissue: tissue data structure
    2. genepattern: symbolic abstract shapes manipulation
    3. tuto: tutorials
    4. growth: geometrical deformation (growth) function
    5. tissueedit: Editors of tissue properties
    6. tissueshape: geometric representation of tissue data structure
    7. tissueview: 3D views on tissue
    8. vmanalysis: tools to manage 3D images (inrimage, filters, meshing, …)

test issues

  • issues with test_projshape under MAC. Works in python shell but not with nosetest
  • fractalysis issue with viewer under MAC
  • lpy: test failure with production rule under MAC
Unit Tests
packages Linux MacOsX Windows
PlantGL 1 error 5 errors 1 error
tool :-) :-) =)
stat_tool :-) :-) :-)
sequence_analysis :-) :-) =)
amlobj :-) :-) =)
mtg :-) :-) =)
tree_matching :-) :-) =)
aml 2 errors 1 errors 7 errors
fractalysis :-) 2 error 2 errors
tree :-) :-) =)
tree_statistic :-) :-) 1 error
container :-) :-) =)
newmtg :-) :-) =)
WeberPenn :-) :-) :-)
lpy :-) 1 error :-)

Alinea Packages

Unit Tests
packages Linux MacOsX Windows
caribu =) =) =)
graphtal 1 error 1 error 1 error
adel =) 6 errors 6 errors
topvine =) =) =)

Linux

  • Fedora and other linux version: copy option_linux.py to options.py in PlantGL

Fedora 10

test that fails under vplants:

  • aml : 2 tests
  • tree_statistic: seg fault
  • PlantGL: test_image

alinea:

  • graphtal missing module
  • ecomeristem: issue with starter module missing
Fedora 10 python 2.5.2 and scons1.2 boost 1.34
tasks openalea vplants alinea
svn co branch/release_0_8 :-P :-P :-P
make install :-P :-P :-P
make nosetests :-P :-P :-P
eggs available :-P :-P :-P
make sdist :-P :-P :-P
make html :-P :-P :-(
make latex :-P :-P :-(
gforge_upload :-P :-P :-P
ez_alea_install :-P :-P :-P
demo :-P :-P :-/
Fedora 11 python 2.5.2 and scons1.2 boost 1.34
tasks openalea vplants alinea
svn co branch/release_0_8 :-P :-P :-P
make install :-P :-P :-P
make nosetests :-P :-P :-P
eggs available :-P :-P :-P
make sdist :-P :-P :-P
make html :-P :-P :-(
make latex :-P :-P :-(
gforge_upload :-P :-P :-P
ez_alea_install :-P :-P :-P
demo :-P :-P :-/

Fedora 12

Fedora 12 python 2.6.2 and scons1.2 boost 1.xx
tasks openalea vplants alinea
svn co branch/release_0_8 :-P :-P :-P
make install :-P :-P :-P
make nosetests :-P :-P :-P
eggs available :-P :-P :-P
make sdist :-P :-P :-P
make html :-P :-P :-(
make latex :-P :-P :-(
gforge_upload :-P :-P :-P
ez_alea_install :-P :-P :-P
demo :-P :-P :-P

Ubuntu 9.10

issues with the composite node

Ubuntu 9.10 python 2.6.4 and scons1.2 boost 1.41
tasks openalea vplants alinea
svn co branch/release_0_8 :-P :-P TODO
make install :-P :-P TODO
make nosetests TODO TODO TODO
eggs available :-P TODO TODO
make sdist :-P TODO TODO
make html TODO TODO TODO
make latex TODO TODO TODO
make upload_dist TODO TODO TODO
ez_alea_install :-P TODO TODO
demo :-P TODO TODO

Windows

WINDOWS XP python 2.6.4 and scons1.2 boost 1.41
tasks openalea vplants alinea
svn co branch/release_0_8 TODO TODO TODO
make install TODO TODO TODO
make nosetests TODO TODO TODO
eggs available TODO TODO TODO
make sdist TODO TODO TODO
make html TODO TODO TODO
make latex TODO TODO TODO
make upload_dist TODO TODO TODO
ez_alea_install TODO TODO TODO
demo TODO TODO TODO

Mac 10.6

MAC OS X python 2.6.1 and scons1.2 boost 1.41
tasks openalea vplants alinea
svn co branch/release_0_8 =) =) =)
make install =) =) =)
make nosetests =) =) =)
eggs available =) =) =)
make sdist =) =) =)
make html =) =) =)
make latex =) =) =)
make upload_dist =) =) =)
ez_alea_install TODO TODO TODO
demo TODO TODO TODO
 
documentation/release_status_0.8.0.txt · Last modified: 2010/02/08 16:21 by admin   Back to top
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