Table of Contents

Spatio-temporal simulation environment (STSE)

Authors : S. Stoma

Institutes : Humboldt University (Berlin) / INRIA.

Type : Autonomous applications - Python package.

Status : in development.

License : GPL.


Spatio-temporal simulation environment (STSE) a set of tools and workflows facilitating spatio-temporal simulations (preferably of biological systems) based on microscopy data. The framework currently contains modules to digitize, represent, analyze, and model spatial distributions of molecules in static and dynamic structures (e.g. growing). A strong accent is put for the experimental verification of biological models by actual, spatio-temporal data acquired using microscopy techniques

Please visit the STSE website for a complete documentation.


The installation process is described on this page .


Simulation results 1 Simulation results 2 Diffusion in a cancer cell

Forum/Mailing list

You can find the STSE mailing list under this address: